Package: phylin 2.0.2
phylin: Spatial Interpolation of Genetic Data
The spatial interpolation of genetic distances between samples is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.
Authors:
phylin_2.0.2.tar.gz
phylin_2.0.2.zip(r-4.7)phylin_2.0.2.zip(r-4.6)phylin_2.0.2.zip(r-4.5)
phylin_2.0.2.tgz(r-4.6-any)phylin_2.0.2.tgz(r-4.5-any)
phylin_2.0.2.tar.gz(r-4.7-any)phylin_2.0.2.tar.gz(r-4.6-any)
phylin_2.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phylin/json (API)
| # Install 'phylin' in R: |
| install.packages('phylin', repos = c('https://ptarroso.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ptarroso/phylin/issues
- d.gen - Genetic distance matrix between vipers and lineages.
- grid - Grid centroids for the Iberian Peninsula.
- simul.env - Simulated environments.
- simul.gen.dist - Simulated genetic distances.
- simul.sample - Random samples from simulation.
- vipers - Vipers sample locations for 'd.gen' dataset.
Last updated from:6e407da85a. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 127 | ||
| source / vignettes | OK | 300 | ||
| linux-release-x86_64 | OK | 112 | ||
| macos-release-arm64 | OK | 143 | ||
| macos-oldrel-arm64 | OK | 144 | ||
| windows-devel | OK | 108 | ||
| windows-release | OK | 87 | ||
| windows-oldrel | OK | 77 | ||
| wasm-release | OK | 86 |
Exports:extract.valgen.variogramgeo.distgrid.imagegv.modelidwintgen.idwkrigmidpointsmpinvmtest.gvmultispeciesplot.gvpredict.gvprint.gvsummary.gv
Dependencies:
