Package: phylin 2.0.2
phylin: Spatial Interpolation of Genetic Data
The spatial interpolation of genetic distances between samples is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.
Authors:
phylin_2.0.2.tar.gz
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phylin_2.0.2.tgz(r-4.4-any)phylin_2.0.2.tgz(r-4.3-any)
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phylin.pdf |phylin.html✨
phylin/json (API)
| # Install 'phylin' in R: |
| install.packages('phylin', repos = c('https://ptarroso.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ptarroso/phylin/issues
- d.gen - Genetic distance matrix between vipers and lineages.
- grid - Grid centroids for the Iberian Peninsula.
- simul.env - Simulated environments.
- simul.gen.dist - Simulated genetic distances.
- simul.sample - Random samples from simulation.
- vipers - Vipers sample locations for 'd.gen' dataset.
Last updated 5 years agofrom:6e407da85a. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 01 2024 |
| R-4.5-win | OK | Nov 01 2024 |
| R-4.5-linux | OK | Nov 01 2024 |
| R-4.4-win | OK | Nov 01 2024 |
| R-4.4-mac | OK | Nov 01 2024 |
| R-4.3-win | OK | Nov 01 2024 |
| R-4.3-mac | OK | Nov 01 2024 |
Exports:extract.valgen.variogramgeo.distgrid.imagegv.modelidwintgen.idwkrigmidpointsmpinvmtest.gvmultispeciesplot.gvpredict.gvprint.gvsummary.gv
Dependencies:
